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» Hardness Results for Homology Localization
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CIKM
2008
Springer
13 years 9 months ago
Pairwise statistical significance of local sequence alignment using multiple parameter sets
Background: Accurate estimation of statistical significance of a pairwise alignment is an important problem in sequence comparison. Recently, a comparative study of pairwise stati...
Ankit Agrawal, Xiaoqiu Huang
HPDC
2010
IEEE
13 years 8 months ago
MPIPairwiseStatSig: parallel pairwise statistical significance estimation of local sequence alignment
Sequence comparison is considered as a cornerstone application in bioinformatics, which forms the basis of many other applications. In particular, pairwise sequence alignment is a...
Ankit Agrawal, Sanchit Misra, Daniel Honbo, Alok N...
BMCBI
2005
152views more  BMCBI 2005»
13 years 7 months ago
Improved profile HMM performance by assessment of critical algorithmic features in SAM and HMMER
Background: Profile hidden Markov model (HMM) techniques are among the most powerful methods for protein homology detection. Yet, the critical features for successful modelling ar...
Markus Wistrand, Erik L. L. Sonnhammer
ECCC
2006
116views more  ECCC 2006»
13 years 7 months ago
Uniform Hardness Amplification in NP via Monotone Codes
We consider the problem of amplifying uniform average-case hardness of languages in NP, where hardness is with respect to BPP algorithms. We introduce the notion of monotone error...
Joshua Buresh-Oppenheim, Valentine Kabanets, Rahul...
IJCV
2008
88views more  IJCV 2008»
13 years 7 months ago
On the Local Behavior of Spaces of Natural Images
In this study we concentrate on qualitative topological analysis of the local behavior of the space of natural images. To this end, we use a space of 3 by 3 high-contrast patches ...
Gunnar Carlsson, Tigran Ishkhanov, Vin de Silva, A...