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» Having a BLAST: Analyzing Gene Sequence Data with BlastQuest
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BMCBI
2006
102views more  BMCBI 2006»
13 years 7 months ago
UVPAR: fast detection of functional shifts in duplicate genes
Background: The imprint of natural selection on gene sequences is often difficult to detect. A plethora of methods have been devised to detect genetic changes due to selective pro...
Vicente Arnau, Miguel Gallach, J. Ignasi Lucas, Ig...
BMCBI
2008
108views more  BMCBI 2008»
13 years 7 months ago
Supervised Lowess normalization of comparative genome hybridization data - application to lactococcal strain comparisons
Background: Array-based comparative genome hybridization (aCGH) is commonly used to determine the genomic content of bacterial strains. Since prokaryotes in general have less cons...
Sacha A. F. T. van Hijum, Richard J. S. Baerends, ...
BMCBI
2008
146views more  BMCBI 2008»
13 years 7 months ago
EST Express: PHP/MySQL based automated annotation of ESTs from expression libraries
Background: Several biological techniques result in the acquisition of functional sets of cDNAs that must be sequenced and analyzed. The emergence of redundant databases such as U...
Robin P. Smith, William J. Buchser, Marcus B. Lemm...
GECCO
2003
Springer
141views Optimization» more  GECCO 2003»
14 years 18 days ago
Finding the Optimal Gene Order in Displaying Microarray Data
The rapid advances of genome-scale sequencing have brought out the necessity of developing new data processing techniques for enormous genomic data. Microarrays, for example, can g...
Seung-Kyu Lee, Yong-Hyuk Kim, Byung Ro Moon
BIOINFORMATICS
2006
135views more  BIOINFORMATICS 2006»
13 years 7 months ago
Effective similarity measures for expression profiles
It is commonly accepted that genes with similar expression profiles are functionally related. However, there are many ways one can measure the similarity of expression profiles, a...
Golan Yona, William Dirks, Shafquat Rahman, David ...