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BMCBI
2010
175views more  BMCBI 2010»
13 years 10 months ago
Towards high performance computing for molecular structure prediction using IBM Cell Broadband Engine - an implementation perspe
Background: RNA structure prediction problem is a computationally complex task, especially with pseudo-knots. The problem is well-studied in existing literature and predominantly ...
S. P. T. Krishnan, Sim Sze Liang, Bharadwaj Veerav...
CLUSTER
2007
IEEE
14 years 4 months ago
Balancing productivity and performance on the cell broadband engine
— The Cell Broadband Engine (BE) is a heterogeneous multicore processor, combining a general-purpose POWER architecture core with eight independent single-instructionmultiple-dat...
Sadaf R. Alam, Jeremy S. Meredith, Jeffrey S. Vett...
IWOMP
2007
Springer
14 years 4 months ago
Supporting OpenMP on Cell
The Cell processor is a heterogeneous multi-core processor with one Power Processing Engine (PPE) core and eight Synergistic Processing Engine (SPE) cores. Each SPE has a directly...
Kevin O'Brien, Kathryn M. O'Brien, Zehra Sura, Ton...
APLAS
2005
ACM
14 years 3 months ago
Transformation to Dynamic Single Assignment Using a Simple Data Flow Analysis
This paper presents a novel method to construct a dynamic single assignment (DSA) form of array-intensive, pointer-free C programs (or in any other procedural language). A program ...
Peter Vanbroekhoven, Gerda Janssens, Maurice Bruyn...
IPPS
2005
IEEE
14 years 3 months ago
Automatic Construction and Evaluation of Performance Skeletons
The performance skeleton of an application is a short running program whose execution time in any scenario reflects the estimated execution time of the application it represents....
Sukhdeep Sodhi, Jaspal Subhlok