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» Heuristic Evaluations of Bioinformatics Tools: A Development...
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ICCS
2005
Springer
14 years 1 months ago
SWAT: A New Spliced Alignment Tool Tailored for Handling More Sequencing Errors
Abstract. There are several computer programs that align mRNA with its genomic counterpart to determine exon boundaries. Though most of these programs perform such alignment effici...
Yifeng Li, Hesham H. Ali
BMCBI
2006
147views more  BMCBI 2006»
13 years 7 months ago
A case study in pathway knowledgebase verification
Background: Biological databases and pathway knowledgebases are proliferating rapidly. We are developing software tools for computer-aided hypothesis design and evaluation, and we...
Stephen A. Racunas, Nigam Shah, Nina V. Fedoroff
COREGRID
2007
Springer
14 years 1 months ago
Simplifying Grid Application Programming Using Web-Enabled Code Transfer Tools
This paper deals with one of the fundamental properties of grid computing – transferring code between grid nodes and executing it remotely on heterogeneous hosts. Contemporary mi...
Catalin Dumitrescu, Jan Dünnweber, Philipp L&...
BMCBI
2008
142views more  BMCBI 2008»
13 years 7 months ago
Optimal neighborhood indexing for protein similarity search
Background: Similarity inference, one of the main bioinformatics tasks, has to face an exponential growth of the biological data. A classical approach used to cope with this data ...
Pierre Peterlongo, Laurent Noé, Dominique L...
LPAR
2000
Springer
13 years 11 months ago
Encoding Temporal Logics in Executable Z: A Case Study for the ZETA System
Abstract. The ZETA system is a Z-based tool environment for developing formal specifications. It contains a component for executing the Z language based on the implementation techn...
Wolfgang Grieskamp, Markus Lepper