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» Heuristics for the Phylogeny Problem
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ICFP
2010
ACM
13 years 10 months ago
Matching lenses: alignment and view update
Bidirectional programming languages are a practical approach to the view update problem. Programs in these languages, called lenses, define both a view and an update policy--i.e.,...
Davi M. J. Barbosa, Julien Cretin, Nate Foster, Mi...
ICML
2010
IEEE
13 years 10 months ago
Large Scale Max-Margin Multi-Label Classification with Priors
We propose a max-margin formulation for the multi-label classification problem where the goal is to tag a data point with a set of pre-specified labels. Given a set of L labels, a...
Bharath Hariharan, Lihi Zelnik-Manor, S. V. N. Vis...
BMCBI
2008
166views more  BMCBI 2008»
13 years 9 months ago
Biclustering via optimal re-ordering of data matrices in systems biology: rigorous methods and comparative studies
Background: The analysis of large-scale data sets via clustering techniques is utilized in a number of applications. Biclustering in particular has emerged as an important problem...
Peter A. DiMaggio Jr., Scott R. McAllister, Christ...
DAM
2010
112views more  DAM 2010»
13 years 9 months ago
New results on optimizing rooted triplets consistency
Abstract. A set of phylogenetic trees with overlapping leaf sets is consistent if it can be merged without conflicts into a supertree. In this paper, we study the polynomial-time a...
Jaroslaw Byrka, Sylvain Guillemot, Jesper Jansson
BMCBI
2006
88views more  BMCBI 2006»
13 years 9 months ago
A two-sample Bayesian t-test for microarray data
Background: Determining whether a gene is differentially expressed in two different samples remains an important statistical problem. Prior work in this area has featured the use ...
Richard J. Fox, Matthew W. Dimmic