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» Hiding Communication Latency in Data Parallel Applications
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ICPPW
2009
IEEE
13 years 5 months ago
A Scalable Parallel Approach for Peptide Identification from Large-Scale Mass Spectrometry Data
Identifying peptides, which are short polymeric chains of amino acid residues in a protein sequence, is of fundamental importance in systems biology research. The most popular appr...
Gaurav Ramesh Kulkarni, Ananth Kalyanaraman, Willi...
VLDB
1994
ACM
137views Database» more  VLDB 1994»
14 years 3 days ago
Performance of Data-Parallel Spatial Operations
The performance of data-parallel algorithms for spatial operations using data-parallel variants of the bucket PMR quadtree, R-tree, and R+-tree spatial data structures is compared...
Erik G. Hoel, Hanan Samet
IPSN
2009
Springer
14 years 2 months ago
Application-informed radio duty-cycling in a re-taskable multi-user sensing system
As sensor networks mature, there will be an increasing need for re-usable, dynamically taskable software systems that support multiple concurrent applications. In this paper, we c...
Omprakash Gnawali, Jongkeun Na, Ramesh Govindan
CLUSTER
2002
IEEE
14 years 1 months ago
I/O Analysis and Optimization for an AMR Cosmology Application
In this paper, we investigate the data access patterns and file I/O behaviors of a production cosmology application that uses the adaptive mesh refinement (AMR) technique for it...
Jianwei Li, Wei-keng Liao, Alok N. Choudhary, Vale...
SOSP
2007
ACM
14 years 5 months ago
Sinfonia: a new paradigm for building scalable distributed systems
We propose a new paradigm for building scalable distributed systems. Our approach does not require dealing with message-passing protocols—a major complication in existing distri...
Marcos Kawazoe Aguilera, Arif Merchant, Mehul A. S...