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BMCBI
2011
13 years 1 months ago
Clustering gene expression data with a penalized graph-based metric
Background: The search for cluster structure in microarray datasets is a base problem for the so-called “-omic sciences”. A difficult problem in clustering is how to handle da...
Ariel E. Bayá, Pablo M. Granitto
WWW
2011
ACM
13 years 5 months ago
Pragmatic evaluation of folksonomies
Recently, a number of algorithms have been proposed to obtain hierarchical structures — so-called folksonomies — from social tagging data. Work on these algorithms is in part ...
Denis Helic, Markus Strohmaier, Christoph Trattner...
BMCBI
2010
143views more  BMCBI 2010»
13 years 10 months ago
ETE: a python Environment for Tree Exploration
Background: Many bioinformatics analyses, ranging from gene clustering to phylogenetics, produce hierarchical trees as their main result. These are used to represent the relations...
Jaime Huerta-Cepas, Joaquín Dopazo, Toni Ga...
BMCBI
2008
134views more  BMCBI 2008»
13 years 10 months ago
Clustering cancer gene expression data: a comparative study
Background The use of clustering methods for the discovery of cancer subtypes has drawn a great deal of attention in the scientific community. While bioinformaticians have propose...
Marcílio Carlos Pereira de Souto, Ivan G. C...
BMCBI
2011
13 years 5 months ago
A novel approach to the clustering of microarray data via nonparametric density estimation
Background: Cluster analysis is a crucial tool in several biological and medical studies dealing with microarray data. Such studies pose challenging statistical problems due to di...
Riccardo De Bin, Davide Risso