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CSB
2005
IEEE
114views Bioinformatics» more  CSB 2005»
15 years 10 months ago
EigenPhenotypes: Towards an Algorithmic Framework for Phenotype Discovery
Studying the genetic control of molecular, anatomical and/or morphological phenotypes in model organisms is a powerful tool in the functional analysis of a gene. The goal of our r...
Alexander Vaughan, Rahul Singh, Ilmi Yoon, Megumi ...
WABI
2005
Springer
128views Bioinformatics» more  WABI 2005»
15 years 10 months ago
Algorithms for Imperfect Phylogeny Haplotyping (IPPH) with a Single Homoplasy or Recombination Event
Abstract. The haplotype inference (HI) problem is the problem of inferring 2n haplotype pairs from n observed genotype vectors. This is a key problem that arises in studying geneti...
Yun S. Song, Yufeng Wu, Dan Gusfield
152
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JASIS
2007
122views more  JASIS 2007»
15 years 4 months ago
Exploiting parallelism to support scalable hierarchical clustering
A distributed memory parallel version of the group average Hierarchical Agglomerative Clustering algorithm is proposed to enable scaling the document clustering problem to large c...
Rebecca Cathey, Eric C. Jensen, Steven M. Beitzel,...
ICANNGA
2009
Springer
203views Algorithms» more  ICANNGA 2009»
15 years 11 months ago
NEAT in HyperNEAT Substituted with Genetic Programming
In this paper we present application of genetic programming (GP) [1] to evolution of indirect encoding of neural network weights. We compare usage of original HyperNEAT algorithm w...
Zdenek Buk, Jan Koutník, Miroslav Snorek
EVOW
2004
Springer
15 years 10 months ago
Two-Step Genetic Programming for Optimization of RNA Common-Structure
We present an algorithm for identifying putative non-coding RNA (ncRNA) using an RCSG (RNA Common-Structural Grammar) and show the effectiveness of the algorithm. The algorithm con...
Jin-Wu Nam, Je-Gun Joung, Y. S. Ahn, Byoung-Tak Zh...