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» Hierarchy as a new data type for qualitative variables
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WABI
2005
Springer
110views Bioinformatics» more  WABI 2005»
14 years 26 days ago
Alignment of Tandem Repeats with Excision, Duplication, Substitution and Indels (EDSI)
Abstract. Traditional sequence comparison by alignment applies a mutation model comprising two events, substitutions and indels (insertions or deletions) of single positions (SI). ...
Michael Sammeth, Thomas Weniger, Dag Harmsen, Jens...
BMCBI
2010
153views more  BMCBI 2010»
13 years 7 months ago
Challenges in microarray class discovery: a comprehensive examination of normalization, gene selection and clustering
Background: Cluster analysis, and in particular hierarchical clustering, is widely used to extract information from gene expression data. The aim is to discover new classes, or su...
Eva Freyhult, Mattias Landfors, Jenny Önskog,...
CIKM
2004
Springer
14 years 24 days ago
Scalable sequential pattern mining for biological sequences
Biosequences typically have a small alphabet, a long length, and patterns containing gaps (i.e., “don’t care”) of arbitrary size. Mining frequent patterns in such sequences ...
Ke Wang, Yabo Xu, Jeffrey Xu Yu
SDM
2010
SIAM
166views Data Mining» more  SDM 2010»
13 years 5 months ago
Directed Network Community Detection: A Popularity and Productivity Link Model
In this paper, we consider the problem of community detection in directed networks by using probabilistic models. Most existing probabilistic models for community detection are ei...
Tianbao Yang, Yun Chi, Shenghuo Zhu, Yihong Gong, ...
EMMCVPR
2011
Springer
12 years 7 months ago
Optimization of Robust Loss Functions for Weakly-Labeled Image Taxonomies: An ImageNet Case Study
The recently proposed ImageNet dataset consists of several million images, each annotated with a single object category. However, these annotations may be imperfect, in the sense t...
Julian John McAuley, Arnau Ramisa, Tibério ...