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BMCBI
2008
115views more  BMCBI 2008»
13 years 11 months ago
BioGraphE: high-performance bionetwork analysis using the Biological Graph Environment
Background: Graphs and networks are common analysis representations for biological systems. Many traditional graph algorithms such as k-clique, k-coloring, and subgraph matching h...
George Chin Jr., Daniel G. Chavarría-Mirand...
IJHPCN
2006
106views more  IJHPCN 2006»
13 years 11 months ago
Performance evaluation of the Sun Fire Link SMP clusters
As symmetric multiprocessors become commonplace, the interconnection networks and the communication system software in clusters of multiprocessors become critical to achieving high...
Ying Qian, Ahmad Afsahi, Nathan R. Fredrickson, Re...
HIPC
2009
Springer
13 years 8 months ago
Comparing the performance of clusters, Hadoop, and Active Disks on microarray correlation computations
Abstract--Microarray-based comparative genomic hybridization (aCGH) offers an increasingly fine-grained method for detecting copy number variations in DNA. These copy number variat...
Jeffrey A. Delmerico, Nathanial A. Byrnes, Andrew ...
SIGUCCS
1998
ACM
14 years 3 months ago
The ResNet Obstacle Course
There are many ways to train student employees, but hands-on experience is invaluable. To provide our Resident Computer Consultants (RCCs) with the experience they need to solve t...
Kathleen A. Hausmann
IEEEPACT
2007
IEEE
14 years 5 months ago
Performance Portable Optimizations for Loops Containing Communication Operations
Effective use of communication networks is critical to the performance and scalability of parallel applications. Partitioned Global Address Space languages like UPC bring the pro...
Costin Iancu, Wei Chen, Katherine A. Yelick