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» High Performance Computing with Harness over InfiniBand
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RECOMB
2010
Springer
14 years 2 days ago
naiveBayesCall: An Efficient Model-Based Base-Calling Algorithm for High-Throughput Sequencing
Immense amounts of raw instrument data (i.e., images of fluorescence) are currently being generated using ultra high-throughput sequencing platforms. An important computational cha...
Wei-Chun Kao, Yun S. Song
ECCV
2006
Springer
15 years 5 days ago
Segmentation of High Angular Resolution Diffusion MRI Modeled as a Field of von Mises-Fisher Mixtures
High angular resolution diffusion imaging (HARDI) permits the computation of water molecule displacement probabilities over a sphere of possible displacement directions. This proba...
Tim McGraw, Baba C. Vemuri, Robert Yezierski, Thom...
ISCAPDCS
2007
13 years 11 months ago
Architectural requirements of parallel computational biology applications with explicit instruction level parallelism
—The tremendous growth in the information culture, efficient digital searches are needed to extract and identify information from huge data. The notion that evolution in silicon ...
Naeem Zafar Azeemi
IPPS
1999
IEEE
14 years 2 months ago
Performance Results for a Reliable Low-Latency Cluster Communication Protocol
Existing low-latency protocols make unrealistically strong assumptions about reliability. This allows them to achieve impressive performance, but also prevents this performance bei...
Stephen R. Donaldson, Jonathan M. D. Hill, David B...
IPPS
2006
IEEE
14 years 4 months ago
A framework to develop symbolic performance models of parallel applications
Performance and workload modeling has numerous uses at every stage of the high-end computing lifecycle: design, integration, procurement, installation and tuning. Despite the trem...
Sadaf R. Alam, Jeffrey S. Vetter