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» High Performance Database Searching with HMMer on FPGAs
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ICDE
2008
IEEE
152views Database» more  ICDE 2008»
14 years 9 months ago
Efficient Merging and Filtering Algorithms for Approximate String Searches
We study the following problem: how to efficiently find in a collection of strings those similar to a given query string? Various similarity functions can be used, such as edit dis...
Chen Li, Jiaheng Lu, Yiming Lu
BIOCOMP
2006
13 years 9 months ago
Acceleration of Covariance Models for Non-coding RNA Search
Stochastic context-free grammar (SCFG) based models for non-coding RNA (ncRNA) gene searches are much more powerful than regular grammar based models due to the ability to model in...
Scott F. Smith 0002
SIGMOD
2007
ACM
232views Database» more  SIGMOD 2007»
14 years 8 months ago
BLINKS: ranked keyword searches on graphs
Query processing over graph-structured data is enjoying a growing number of applications. Keyword search on a graph finds a set of answers, each of which is a substructure of the ...
Haixun Wang, Hao He, Jun Yang 0001, Philip S. Yu
SIGMOD
2010
ACM
324views Database» more  SIGMOD 2010»
14 years 23 days ago
Similarity search and locality sensitive hashing using ternary content addressable memories
Similarity search methods are widely used as kernels in various data mining and machine learning applications including those in computational biology, web search/clustering. Near...
Rajendra Shinde, Ashish Goel, Pankaj Gupta, Debojy...
PVLDB
2008
98views more  PVLDB 2008»
13 years 7 months ago
Performance profiling with EndoScope, an acquisitional software monitoring framework
We propose EndoScope, a software monitoring framework that allows users to pose declarative queries that monitor the state and performance of running programs. Unlike most existin...
Alvin Cheung, Samuel Madden