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» High Performance Database Searching with HMMer on FPGAs
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BMCBI
2006
108views more  BMCBI 2006»
13 years 8 months ago
SPIDer: Saccharomyces protein-protein interaction database
Background: Since proteins perform their functions by interacting with one another and with other biomolecules, reconstructing a map of the protein-protein interactions of a cell,...
Xiaomei Wu, Lei Zhu, Jie Guo, Cong Fu, Hongjun Zho...
SIGMOD
2005
ACM
178views Database» more  SIGMOD 2005»
14 years 8 months ago
Towards Effective Indexing for Very Large Video Sequence Database
With rapid advances in video processing technologies and ever fast increments in network bandwidth, the popularity of video content publishing and sharing has made similarity sear...
Heng Tao Shen, Beng Chin Ooi, Xiaofang Zhou
DEXA
2006
Springer
126views Database» more  DEXA 2006»
13 years 10 months ago
Hypersphere Indexer
Indexing high-dimensional data for efficient nearest-neighbor searches poses interesting research challenges. It is well known that when data dimension is high, the search time can...
Navneet Panda, Edward Y. Chang, Arun Qamra
BIBE
2005
IEEE
126views Bioinformatics» more  BIBE 2005»
14 years 1 months ago
Highly Scalable and Accurate Seeds for Subsequence Alignment
We propose a method for finding seeds for the local alignment of two nucleotide sequences. Our method uses randomized algorithms to find approximate seeds. We present a dynamic ...
Abhijit Pol, Tamer Kahveci
ICIP
2003
IEEE
14 years 9 months ago
Fast similarity search on video signatures
Video signatures are compact representations of video sequences designed for efficient similarity measurement. In this paper, we propose a feature extraction technique to support ...
Sen-Ching S. Cheung, Avideh Zakhor