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BMCBI
2010
175views more  BMCBI 2010»
13 years 7 months ago
Towards high performance computing for molecular structure prediction using IBM Cell Broadband Engine - an implementation perspe
Background: RNA structure prediction problem is a computationally complex task, especially with pseudo-knots. The problem is well-studied in existing literature and predominantly ...
S. P. T. Krishnan, Sim Sze Liang, Bharadwaj Veerav...
WSC
2008
13 years 9 months ago
An application of parallel Monte Carlo modeling for real-time disease surveillance
The global health, threatened by emerging infectious diseases, pandemic influenza, and biological warfare, is becoming increasingly dependent on the rapid acquisition, processing,...
David W. Bauer, Mojdeh Mohtashemi
WEA
2005
Springer
176views Algorithms» more  WEA 2005»
14 years 29 days ago
High-Performance Algorithm Engineering for Large-Scale Graph Problems and Computational Biology
Abstract. Many large-scale optimization problems rely on graph theoretic solutions; yet high-performance computing has traditionally focused on regular applications with high degre...
David A. Bader
HPDC
2007
IEEE
14 years 1 months ago
Direct-pNFS: scalable, transparent, and versatile access to parallel file systems
Grid computations require global access to massive data stores. To meet this need, the GridNFS project aims to provide scalable, high-performance, transparent, and secure wide-are...
Dean Hildebrand, Peter Honeyman
IPPS
2006
IEEE
14 years 1 months ago
A study of MPI performance analysis tools on Blue Gene/L
Applications on todays massively parallel supercomputers rely on performance analysis tools to guide them toward scalable performance on thousands of processors. However, conventi...
I-Hsin Chung, Robert Walkup, Hui-Fang Wen, Hao Yu