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ISCAS
2005
IEEE
129views Hardware» more  ISCAS 2005»
14 years 2 months ago
A reconfigurable architecture for scanning biosequence databases
—Unknown protein sequences are often compared to a set of known sequences (a database scan) to detect functional similarities. Even though efficient dynamic programming algorithm...
Timothy F. Oliver, Bertil Schmidt, Douglas L. Mask...
IPPS
2006
IEEE
14 years 3 months ago
Implementation of a programmable array processor architecture for approximate string matching algorithms on FPGAs
Approximate string matching problem is a common and often repeated task in information retrieval and bioinformatics. This paper proposes a generic design of a programmable array p...
Panagiotis D. Michailidis, Konstantinos G. Margari...
SC
2009
ACM
14 years 3 months ago
Early performance evaluation of a "Nehalem" cluster using scientific and engineering applications
In this paper, we present an early performance evaluation of a 624-core cluster based on the Intel® Xeon® Processor 5560 (code named “Nehalem-EP”, and referred to as Xeon 55...
Subhash Saini, Andrey Naraikin, Rupak Biswas, Davi...
SC
2009
ACM
14 years 1 months ago
Comparative study of one-sided factorizations with multiple software packages on multi-core hardware
The emergence and continuing use of multi-core architectures require changes in the existing software and sometimes even a redesign of the established algorithms in order to take ...
Emmanuel Agullo, Bilel Hadri, Hatem Ltaief, Jack D...
IPPS
2003
IEEE
14 years 2 months ago
A Novel Design Technology for Next Generation Ubiquitous Computing Architecture
Modern applications for mobile computing require high performance architectures. On the other hand, there are restrictions such as storage or power consumption. The use of recon...
Carsten Nitsch, Camillo Lara, Udo Kebschull