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BMCBI
2006
102views more  BMCBI 2006»
13 years 7 months ago
SNA - a toolbox for the stoichiometric analysis of metabolic networks
Background: Despite recent algorithmic and conceptual progress, the stoichiometric network analysis of large metabolic models remains a computationally challenging problem. Result...
Robert Urbanczik
SP
2008
IEEE
122views Security Privacy» more  SP 2008»
13 years 7 months ago
Large-scale phylogenetic analysis on current HPC architectures
Abstract. Phylogenetic inference is considered a grand challenge in Bioinformatics due to its immense computational requirements. The increasing popularity and availability of larg...
Michael Ott, Jaroslaw Zola, Srinivas Aluru, Andrew...
BMCBI
2011
12 years 11 months ago
PeakRanger: A cloud-enabled peak caller for ChIP-seq data
Background: Chromatin immunoprecipitation (ChIP), coupled with massively parallel short-read sequencing (seq) is used to probe chromatin dynamics. Although there are many algorith...
Xin Feng, Robert Grossman, Lincoln Stein
PPOPP
2011
ACM
12 years 10 months ago
GRace: a low-overhead mechanism for detecting data races in GPU programs
In recent years, GPUs have emerged as an extremely cost-effective means for achieving high performance. Many application developers, including those with no prior parallel program...
Mai Zheng, Vignesh T. Ravi, Feng Qin, Gagan Agrawa...
CF
2011
ACM
12 years 7 months ago
SIFT: a low-overhead dynamic information flow tracking architecture for SMT processors
Dynamic Information Flow Tracking (DIFT) is a powerful technique that can protect unmodified binaries from a broad range of vulnerabilities such as buffer overflow and code inj...
Meltem Ozsoy, Dmitry Ponomarev, Nael B. Abu-Ghazal...