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CCGRID
2006
IEEE
14 years 11 days ago
Design of High Performance MVAPICH2: MPI2 over InfiniBand
MPICH2 provides a layered architecture for implementing MPI-2. In this paper, we provide a new design for implementing MPI-2 over InfiniBand by extending the MPICH2 ADI3 layer. Ou...
Wei Huang, Gopalakrishnan Santhanaraman, Hyun-Wook...
CCGRID
2006
IEEE
14 years 2 months ago
Scalable Approaches for Supporting MPI-IO Atomicity
Scalable atomic and parallel access to noncontiguous regions of a file is essential to exploit high performance I/O as required by large-scale applications. Parallel I/O framewor...
Peter M. Aarestad, Avery Ching, George K. Thiruvat...
ICS
1998
Tsinghua U.
14 years 25 days ago
High-level Management of Communication Schedules in HPF-like Languages
The goal of High Performance Fortran (HPF) is to "address the problems of writing data parallel programs where the distribution of data affects performance", providing t...
Siegfried Benkner, Piyush Mehrotra, John Van Rosen...
BMCBI
2010
189views more  BMCBI 2010»
13 years 8 months ago
Efficient parallel and out of core algorithms for constructing large bi-directed de Bruijn graphs
Background: Assembling genomic sequences from a set of overlapping reads is one of the most fundamental problems in computational biology. Algorithms addressing the assembly probl...
Vamsi Kundeti, Sanguthevar Rajasekaran, Hieu Dinh,...
DASFAA
2010
IEEE
179views Database» more  DASFAA 2010»
14 years 3 months ago
Scalable Splitting of Massive Data Streams
Scalable execution of continuous queries over massive data streams often requires splitting input streams into parallel sub-streams over which query operators are executed in paral...
Erik Zeitler, Tore Risch