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SPIRE
2005
Springer
14 years 3 months ago
Composite Pattern Discovery for PCR Application
We consider the problem of finding pairs of short patterns such that, in a given input sequence of length n, the distance between each pair’s patterns is at least α. The proble...
Stanislav Angelov, Shunsuke Inenaga
CIKM
2003
Springer
14 years 3 months ago
HyperThesis: the gRNA spell on the curse of bioinformatics applications integration
In this paper, we describe a graphical workflow management system called HyperThesis to address the challenges of integrating bioinformatics applications. HyperThesis is an integ...
Sourav S. Bhowmick, Vivek Vedagiri, Amey V. Laud
ISMB
1993
13 years 11 months ago
MultiMap: An Expert System for Automated Genetic Linkage Mapping
Withthe advent of the HumanGenomeProject. the ability to rapidly construct comprehensiveand accuratelinkage mapsbasedongenetic markerdata fromfamily studies is an absolute necessi...
Tara Cox Matise, Mark Perlin, Aravinda Chakravarti
BIOINFORMATICS
2007
88views more  BIOINFORMATICS 2007»
13 years 10 months ago
Maximum likelihood of phylogenetic networks
Horizontal gene transfer (HGT) is believed to be ubiquitous among bacteria, and plays a major role in their genome diversification as well as their ability to develop resistance t...
Guohua Jin, Luay Nakhleh, Sagi Snir, Tamir Tuller
BMCBI
2008
123views more  BMCBI 2008»
13 years 10 months ago
Pol II promoter prediction using characteristic 4-mer motifs: a machine learning approach
Background: Eukaryotic promoter prediction using computational analysis techniques is one of the most difficult jobs in computational genomics that is essential for constructing a...
Firoz Anwar, Syed Murtuza Baker, Taskeed Jabid, Md...