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BIBM
2007
IEEE
171views Bioinformatics» more  BIBM 2007»
14 years 4 months ago
GenMiner: Mining Informative Association Rules from Genomic Data
GENMINER is a smart adaptation of closed itemsets based association rules extraction to genomic data. It takes advantage of the novel NORDI discretization method and of the CLOSE ...
Ricardo Martínez, Claude Pasquier, Nicolas ...
BMCBI
2006
139views more  BMCBI 2006»
13 years 10 months ago
Integrated functional visualization of eukaryotic genomes
Background: Increasing amounts of data from large scale whole genome analysis efforts demands convenient tools for manipulation, visualization and investigation. Whole genome plot...
Rohit Ghai, Hannes Lindemann, Trinad Chakraborty
JMLR
2010
133views more  JMLR 2010»
13 years 4 months ago
Hierarchical Cost-Sensitive Algorithms for Genome-Wide Gene Function Prediction
In this work we propose new ensemble methods for the hierarchical classification of gene functions. Our methods exploit the hierarchical relationships between the classes in diffe...
Nicolò Cesa-Bianchi, Giorgio Valentini
BMCBI
2011
13 years 1 months ago
New Words in Human Mutagenesis
Background: The substitution rates within different nucleotide contexts are subject to varying levels of bias. The most well known example of such bias is the excess of C to T (C ...
Alexander Y. Panchin, Sergey I. Mitrofanov, Andrei...
IDEAL
2007
Springer
14 years 4 months ago
Analysis of Tiling Microarray Data by Learning Vector Quantization and Relevance Learning
We apply learning vector quantization to the analysis of tiling microarray data. As an example we consider the classification of C. elegans genomic probes as intronic or exonic. T...
Michael Biehl, Rainer Breitling, Yang Li