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118
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BMCBI
2008
123views more  BMCBI 2008»
15 years 2 months ago
Shape based indexing for faster search of RNA family databases
Background: Most non-coding RNA families exert their function by means of a conserved, common secondary structure. The Rfam data base contains more than five hundred structurally ...
Stefan Janssen, Jens Reeder, Robert Giegerich
BMCBI
2008
102views more  BMCBI 2008»
15 years 2 months ago
Ornithine decarboxylase antizyme finder (OAF): Fast and reliable detection of antizymes with frameshifts in mRNAs
Background: Ornithine decarboxylase antizymes are proteins which negatively regulate cellular polyamine levels via their affects on polyamine synthesis and cellular uptake. In vir...
Michaël Bekaert, Ivaylo P. Ivanov, John F. At...
BMCBI
2004
206views more  BMCBI 2004»
15 years 2 months ago
Combining gene expression data from different generations of oligonucleotide arrays
Background: One of the important challenges in microarray analysis is to take full advantage of previously accumulated data, both from one's own laboratory and from public re...
Kyu Baek Hwang, Sek Won Kong, Steven A. Greenberg,...
COLING
2008
15 years 4 months ago
OntoNotes: Corpus Cleanup of Mistaken Agreement Using Word Sense Disambiguation
Annotated corpora are only useful if their annotations are consistent. Most large-scale annotation efforts take special measures to reconcile inter-annotator disagreement. To date...
Liang-Chih Yu, Chung-Hsien Wu, Eduard H. Hovy
180
Voted
BMCBI
2011
14 years 9 months ago
PileLine: a toolbox to handle genome position information in next-generation sequencing studies
Background: Genomic position (GP) files currently used in next-generation sequencing (NGS) studies are always difficult to manipulate due to their huge size and the lack of approp...
Daniel Glez-Peña, Gonzalo Gómez-L&oa...