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BIBE
2005
IEEE
107views Bioinformatics» more  BIBE 2005»
15 years 8 months ago
DSIM: A Distance-Based Indexing Method for Genomic Sequences
In this paper, we propose a Distance-based Sequence Indexing Method (DSIM) for indexing and searching genome databases. Borrowing the idea of video compression, we compress the ge...
Xia Cao, Beng Chin Ooi, HweeHwa Pang, Kian-Lee Tan...
164
Voted
CPM
2005
Springer
109views Combinatorics» more  CPM 2005»
15 years 8 months ago
Using PQ Trees for Comparative Genomics
Permutations on strings representing gene clusters on genomes have been studied earlier in [18, 14, 3, 12, 17] and the idea of a maximal permutation pattern was introduced in [12]....
Gad M. Landau, Laxmi Parida, Oren Weimann
129
Voted
TREC
2004
15 years 3 months ago
BioText Team Experiments for the TREC 2004 Genomics Track
The BioText group participated in the two main tasks of the TREC 2004 Genomics track. Our approach to the ad hoc task was similar to the one used in the 2003 Genomics track, but d...
Preslav Nakov, Ariel S. Schwartz, Emilia Stoica, M...
BMCBI
2004
75views more  BMCBI 2004»
15 years 2 months ago
Structural characterization of genomes by large scale sequence-structure threading
Background: Using sequence-structure threading we have conducted structural characterization of complete proteomes of 37 archaeal, bacterial and eukaryotic organisms (including wo...
Artem Cherkasov, Steven J. M. Jones
91
Voted
SP
2009
IEEE
15 years 9 months ago
The Mastermind Attack on Genomic Data
In this paper, we study the degree to which a genomic string, Q, leaks details about itself any time it engages in comparison protocols with a genomic querier, Bob, even if those ...
Michael T. Goodrich