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» Hybrid Genetic Algorithm for DNA Sequencing with Errors
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DASFAA
2003
IEEE
151views Database» more  DASFAA 2003»
14 years 23 days ago
Approximate String Matching in DNA Sequences
Approximate string matching on large DNA sequences data is very important in bioinformatics. Some studies have shown that suffix tree is an efficient data structure for approxim...
Lok-Lam Cheng, David Wai-Lok Cheung, Siu-Ming Yiu
ESA
2003
Springer
95views Algorithms» more  ESA 2003»
14 years 21 days ago
Sequencing by Hybridization in Few Rounds
Sequencing by Hybridization (SBH) is a method for reconstructing an unknown DNA string based on obtaining, through hybridization experiments, whether certain short strings appear ...
Dekel Tsur
EMO
2006
Springer
117views Optimization» more  EMO 2006»
13 years 9 months ago
Multiplex PCR Assay Design by Hybrid Multiobjective Evolutionary Algorithm
Abstract. Multiplex Polymerase Chain Reaction (PCR) assay is to amplify multiple target DNAs simultaneously using different primer pairs for each target DNA. Recently, it is widely...
In-Hee Lee, Soo-Yong Shin, Byoung-Tak Zhang
BMCBI
2005
130views more  BMCBI 2005»
13 years 7 months ago
Some statistical properties of regulatory DNA sequences, and their use in predicting regulatory regions in the Drosophila genome
Background: This paper addresses the problem of recognising DNA cis-regulatory modules which are located far from genes. Experimental procedures for this are slow and costly, and ...
Irina I. Abnizova, Rene te Boekhorst, Klaudia Walt...
ICANNGA
2007
Springer
112views Algorithms» more  ICANNGA 2007»
14 years 1 months ago
Multiple Sequence Alignment with Evolutionary-Progressive Method
A new evolutionary-progressive method for Multiple Sequence Alignment problem is proposed. The method efficiently combines flexibility of evolutionary approach with speed and accu...
Pawel Kupis, Jacek Mandziuk