— The Smith-Waterman algorithm is a dynamic programming method for determining optimal local alignments between nucleotide or protein sequences. However, it suffers from quadrati...
Abstract—Transactional Memory (TM) is emerging as a promising technology to simplify parallel programming. While several TM systems have been proposed in the research literature,...
Chi Cao Minh, JaeWoong Chung, Christos Kozyrakis, ...
NAMD† is a portable parallel application for biomolecular simulations. NAMD pioneered the use of hybrid spatial and force decomposition, a technique now used by most scalable pr...
Abhinav Bhatele, Sameer Kumar, Chao Mei, James C. ...
This work describes a Java based development platform which is intended to support ad hoc network researchers in application and protocol design. Software development within this ...
With the advent of chip-multiprocessors, we are faced with the challenge of parallelizing performance-critical software. Transactional memory (TM) has emerged as a promising progr...
Marek Olszewski, Jeremy Cutler, J. Gregory Steffan