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RECOMB
2000
Springer
14 years 11 days ago
Sequencing-by-hybridization at the information-theory bound: an optimal algorithm
In a recent paper (Preparata et al., 1999) we introduced a novel probing scheme for DNA sequencing by hybridization (SBH). The new gapped-probe scheme combines natural and univers...
Franco P. Preparata, Eli Upfal
HYBRID
2010
Springer
14 years 3 months ago
A descent algorithm for the optimal control of constrained nonlinear switched dynamical systems
One of the oldest problems in the study of dynamical systems is the calculation of an optimal control. Though the determination of a numerical solution for the general nonconvex o...
Humberto González, Ramanarayan Vasudevan, M...
BMCBI
2005
90views more  BMCBI 2005»
13 years 8 months ago
An algorithm for the determination and quantification of components of nucleic acid mixtures based on single sequencing reaction
Background: Determination and quantification of nucleic acid components in a mixture is usually accomplished by microarray approaches, where the mixtures are hybridized against sp...
Alexander E. Pozhitkov, Kathryn Stemshorn, Diethar...
CSDA
2007
116views more  CSDA 2007»
13 years 8 months ago
Exploring the state sequence space for hidden Markov and semi-Markov chains
The knowledge of the state sequences that explain a given observed sequence for a known hidden Markovian model is the basis of various methods that may be divided into three categ...
Yann Guédon
BMCBI
2010
121views more  BMCBI 2010»
13 years 3 months ago
G-stack modulated probe intensities on expression arrays - sequence corrections and signal calibration
Background: The brightness of the probe spots on expression microarrays intends to measure the abundance of specific mRNA targets. Probes with runs of at least three guanines (G) ...
Mario Fasold, Peter F. Stadler, Hans Binder