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KELSI
2004
Springer
14 years 25 days ago
A Randomized Algorithm for Distance Matrix Calculations in Multiple Sequence Alignment
Multiple sequence alignment (MSA) is a vital problem in biology. Optimal alignment of multiple sequences becomes impractical even for a modest number of sequences [1] since the gen...
Sanguthevar Rajasekaran, Vishal Thapar, Hardik Dav...
PDP
2010
IEEE
14 years 2 months ago
Experimental Study of Six Different Implementations of Parallel Matrix Multiplication on Heterogeneous Computational Clusters of
—Two strategies of distribution of computations can be used to implement parallel solvers for dense linear algebra problems for Heterogeneous Computational Clusters of Multicore ...
Pedro Alonso, Ravi Reddy, Alexey L. Lastovetsky
ASAP
2008
IEEE
118views Hardware» more  ASAP 2008»
14 years 1 months ago
Bit matrix multiplication in commodity processors
Registers in processors generally contain words or, with the addition of multimedia extensions, short vectors of subwords of bytes or 16-bit elements. In this paper, we view the c...
Yedidya Hilewitz, Cédric Lauradoux, Ruby B....
ERSA
2010
199views Hardware» more  ERSA 2010»
13 years 5 months ago
Reconfigurable Sparse Matrix-Vector Multiplication on FPGAs
Cache-based, general purpose CPUs perform at a small fraction of their maximum floating point performance when executing memory-intensive simulations, such as those required for sp...
Russell Tessier, Salma Mirza, J. Blair Perot
MCS
2010
Springer
14 years 2 months ago
Combining Multiple Kernels by Augmenting the Kernel Matrix
Abstract. In this paper we present a novel approach to combining multiple kernels where the kernels are computed from different information channels. In contrast to traditional me...
Fei Yan, Krystian Mikolajczyk, Josef Kittler, Muha...