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» Hyperdynamics Importance Sampling
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122
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BMCBI
2006
116views more  BMCBI 2006»
15 years 2 months ago
Optimized mixed Markov models for motif identification
Background: Identifying functional elements, such as transcriptional factor binding sites, is a fundamental step in reconstructing gene regulatory networks and remains a challengi...
Weichun Huang, David M. Umbach, Uwe Ohler, Leping ...
117
Voted
SCFBM
2008
92views more  SCFBM 2008»
15 years 2 months ago
CRANKITE: A fast polypeptide backbone conformation sampler
Background: CRANKITE is a suite of programs for simulating backbone conformations of polypeptides and proteins. The core of the suite is an efficient Metropolis Monte Carlo sample...
Alexei A. Podtelezhnikov, David L. Wild
114
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IGARSS
2009
15 years 9 days ago
Spectral Variability within Species and its Effects on Savanna Tree Species Discrimination
Differences in within-species phenology and structure driven by factors including topography, edaphic properties, and climatic variables present important challenges for species d...
Moses Azong Cho, Pravesh Debba, Renaud Mathieu, Bo...
165
Voted
SIAMSC
2011
177views more  SIAMSC 2011»
14 years 9 months ago
Computing f(A)b via Least Squares Polynomial Approximations
Given a certain function f, various methods have been proposed in the past for addressing the important problem of computing the matrix-vector product f(A)b without explicitly comp...
Jie Chen, Mihai Anitescu, Yousef Saad
146
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BMCBI
2011
14 years 6 months ago
Wavelet-based identification of DNA focal genomic aberrations from single nucleotide polymorphism arrays
Background: Copy number aberrations (CNAs) are an important molecular signature in cancer initiation, development, and progression. However, these aberrations span a wide range of...
Youngmi Hur, Hyunju Lee