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BMCBI
2006
374views more  BMCBI 2006»
13 years 8 months ago
AMDA: an R package for the automated microarray data analysis
Background: Microarrays are routinely used to assess mRNA transcript levels on a genome-wide scale. Large amount of microarray datasets are now available in several databases, and...
Mattia Pelizzola, Norman Pavelka, Maria Foti, Paol...
BMCBI
2008
135views more  BMCBI 2008»
13 years 8 months ago
Using Generalized Procrustes Analysis (GPA) for normalization of cDNA microarray data
Background: Normalization is essential in dual-labelled microarray data analysis to remove nonbiological variations and systematic biases. Many normalization methods have been use...
Huiling Xiong, Dapeng Zhang, Christopher J. Martyn...
BMCBI
2006
146views more  BMCBI 2006»
13 years 8 months ago
Recursive gene selection based on maximum margin criterion: a comparison with SVM-RFE
Background: In class prediction problems using microarray data, gene selection is essential to improve the prediction accuracy and to identify potential marker genes for a disease...
Satoshi Niijima, Satoru Kuhara
BMCBI
2007
115views more  BMCBI 2007»
13 years 7 months ago
SpliceMiner: a high-throughput database implementation of the NCBI Evidence Viewer for microarray splice variant analysis
Background: There are many fewer genes in the human genome than there are expressed transcripts. Alternative splicing is the reason. Alternatively spliced transcripts are often sp...
Ari B. Kahn, Michael C. Ryan, Hongfang Liu, Barry ...
ITSSA
2006
109views more  ITSSA 2006»
13 years 8 months ago
Gene Expression Analysis in Multi-Agent Environment
Abstract. This paper presents a multi-agent approach to gene expression analysis and illustrates the working steps using real dataset produced from a microarray experiment. The ana...
H. C. Lam, M. Vazquez, B. Juneja, Scott C. Fahrenk...