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» Identifying Binding Sites in Sequential Genomic Data
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PSB
2004
13 years 10 months ago
Motif Discovery in Heterogeneous Sequence Data
This paper introduces the first integrated algorithm designed to discover novel motifs in heterogeneous sequence data, which is comprised of coregulated genes from a single genome...
Amol Prakash, Mathieu Blanchette, Saurabh Sinha, M...
NAR
2007
155views more  NAR 2007»
13 years 8 months ago
AthaMap web tools for the analysis and identification of co-regulated genes
The AthaMap database generates a map of cisregulatory elements for the whole Arabidopsis thaliana genome. This database has been extended by new tools to identify common cis-regul...
Claudia Galuschka, Martin Schindler, Lorenz Bü...
BMCBI
2005
126views more  BMCBI 2005»
13 years 8 months ago
GANN: Genetic algorithm neural networks for the detection of conserved combinations of features in DNA
Background: The multitude of motif detection algorithms developed to date have largely focused on the detection of patterns in primary sequence. Since sequence-dependent DNA struc...
Robert G. Beiko, Robert L. Charlebois
BMCBI
2007
97views more  BMCBI 2007»
13 years 8 months ago
Relating destabilizing regions to known functional sites in proteins
Background: Most methods for predicting functional sites in protein 3D structures, rely on information on related proteins and cannot be applied to proteins with no known relative...
Benoit H. Dessailly, Marc F. Lensink, Shoshana J. ...
BMCBI
2007
145views more  BMCBI 2007»
13 years 8 months ago
Improved benchmarks for computational motif discovery
Background: An important step in annotation of sequenced genomes is the identification of transcription factor binding sites. More than a hundred different computational methods h...
Geir Kjetil Sandve, Osman Abul, Vegard Walseng, Fi...