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» Identifying Binding Sites in Sequential Genomic Data
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BMCBI
2006
74views more  BMCBI 2006»
13 years 8 months ago
An unsupervised classification scheme for improving predictions of prokaryotic TIS
Background: Although it is not difficult for state-of-the-art gene finders to identify coding regions in prokaryotic genomes, exact prediction of the corresponding translation ini...
Maike Tech, Peter Meinicke
BMCBI
2010
110views more  BMCBI 2010»
13 years 8 months ago
GenHtr: a tool for comparative assessment of genetic heterogeneity in microbial genomes generated by massive short-read sequenci
Background: Microevolution is the study of short-term changes of alleles within a population and their effects on the phenotype of organisms. The result of the below-species-level...
GongXin Yu
NAR
2011
199views Computer Vision» more  NAR 2011»
12 years 11 months ago
RepTar: a database of predicted cellular targets of host and viral miRNAs
Computational identification of putative microRNA (miRNA) targets is an important step towards elucidating miRNA functions. Several miRNA target-prediction algorithms have been de...
Naama Elefant, Amnon Berger, Harel Shein, Matan Ho...
BMCBI
2010
153views more  BMCBI 2010»
13 years 8 months ago
Pash 3.0: A versatile software package for read mapping and integrative analysis of genomic and epigenomic variation using massi
Background: Massively parallel sequencing readouts of epigenomic assays are enabling integrative genome-wide analyses of genomic and epigenomic variation. Pash 3.0 performs sequen...
Cristian Coarfa, Fuli Yu, Christopher A. Miller, Z...
JIB
2006
102views more  JIB 2006»
13 years 8 months ago
3D image and graph based Computation of Protein Surface
The accessible surface of a macromolecule is a significant determinant of its action. The interaction between biomolecules or protein-ligand is dependent on their surfaces rather ...
A. Ranganath, K. C. Shet, N. Vidyavathi