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» Identifying Structural Motifs in Proteins
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BMCBI
2006
141views more  BMCBI 2006»
13 years 10 months ago
Identification of consensus RNA secondary structures using suffix arrays
Background: The identification of a consensus RNA motif often consists in finding a conserved secondary structure with minimum free energy in an ensemble of aligned sequences. How...
Mohammad Anwar, Truong Nguyen, Marcel Turcotte
CAD
2008
Springer
13 years 10 months ago
Shape modeling and matching in identifying 3D protein structures
Sasakthi S. Abeysinghe, Tao Ju, Matthew L. Baker, ...
JCB
2000
71views more  JCB 2000»
13 years 9 months ago
Structure Comparison and Structure Patterns
This article investigates aspects of pairwise and multiple structure comparison, and the problem of automatically discover common patterns in a set of structures. Descriptions and...
Ingvar Eidhammer, Inge Jonassen, William R. Taylor
BMCBI
2006
145views more  BMCBI 2006»
13 years 10 months ago
Fast-Find: A novel computational approach to analyzing combinatorial motifs
Background: Many vital biological processes, including transcription and splicing, require a combination of short, degenerate sequence patterns, or motifs, adjacent to defined seq...
Micah Hamady, Erin Peden, Rob Knight, Ravinder Sin...
BMCBI
2010
122views more  BMCBI 2010»
13 years 10 months ago
Fast and accurate protein substructure searching with simulated annealing and GPUs
Background: Searching a database of protein structures for matches to a query structure, or occurrences of a structural motif, is an important task in structural biology and bioin...
Alex Stivala, Peter J. Stuckey, Anthony Wirth