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» Identifying Structural Motifs in Proteins
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BMCBI
2005
95views more  BMCBI 2005»
13 years 9 months ago
Oligomeric protein structure networks: insights into protein-protein interactions
Background: Protein-protein association is essential for a variety of cellular processes and hence a large number of investigations are being carried out to understand the princip...
K. V. Brinda, Saraswathi Vishveshwara
NAR
2002
164views more  NAR 2002»
13 years 9 months ago
SCOP database in 2002: refinements accommodate structural genomics
The SCOP (Structural Classification of Proteins) database is a comprehensive ordering of all proteins of known structure, according to their evolutionary and structural relationsh...
Loredana Lo Conte, Steven E. Brenner, Tim J. P. Hu...
NAR
2006
98views more  NAR 2006»
13 years 9 months ago
dbPTM: an information repository of protein post-translational modification
ACT dbPTM is a database that compiles information on protein post-translational modifications (PTMs), such as the catalytic sites, solvent accessibility of amino acid residues, pro...
Tzong-Yi Lee, Hsien-Da Huang, Jui-Hung Hung, Hsi-Y...
BMCBI
2006
159views more  BMCBI 2006»
13 years 10 months ago
Prediction of protein continuum secondary structure with probabilistic models based on NMR solved structures
Background: The structure of proteins may change as a result of the inherent flexibility of some protein regions. We develop and explore probabilistic machine learning methods for...
Mikael Bodén, Zheng Yuan, Timothy L. Bailey
IJBRA
2007
88views more  IJBRA 2007»
13 years 9 months ago
Finding molecular complexes through multiple layer clustering of protein interaction networks
: Clustering protein-protein interaction networks (PINs) helps to identify complexes that guide the cell machinery. Clustering algorithms often create a flat clustering, without co...
Bill Andreopoulos, Aijun An, Xiangji Huang, Xiaoga...