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» Identifying Structural Motifs in Proteins
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IJBRA
2008
63views more  IJBRA 2008»
13 years 10 months ago
Protein cavity clustering based on community structure of pocket similarity network
: Functions of a protein are mainly determined by its structure. Surface cavities, also called pockets or clefts, are ordinarily regarded as potentially active sites where the prot...
Zhi-Ping Liu, Ling-Yun Wu, Yong Wang, Xiang-Sun Zh...
BMCBI
2005
149views more  BMCBI 2005»
13 years 9 months ago
The PD-(D/E)XK superfamily revisited: identification of new members among proteins involved in DNA metabolism and functional pre
Background: The PD-(D/E)XK nuclease superfamily, initially identified in type II restriction endonucleases and later in many enzymes involved in DNA recombination and repair, is o...
Jan Kosinski, Marcin Feder, Janusz M. Bujnicki
CIBCB
2005
IEEE
13 years 12 months ago
A Transcriptional Approach to Gene Clustering
— We present an integrative method for clustering coregulated genes and elucidating their underlying regulatory mechanisms. We use multi-state partition functions and thermodynam...
Ilias Tagkopoulos
ISMB
1994
13 years 11 months ago
An Intelligent System for Comparing Protein Structures
Anapproachto protein structure comparisonis presented whichuses techniquesof artificial intelligence (AI) generate a mappingbetweentwoprotein structures. The approachproceedsby fi...
Ethan Benatan
SAC
2006
ACM
14 years 3 months ago
Protein classification using transductive learning on phylogenetic profiles
Phylogenetic profiles of proteins − strings of ones and zeros encoding respectively the presence and absence of proteins in a group of genomes − have recently been used to iden...
Roger A. Craig, Li Liao