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» Identifying Structural Motifs in Proteins
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BMCBI
2008
149views more  BMCBI 2008»
13 years 10 months ago
Clustering of cognate proteins among distinct proteomes derived from multiple links to a single seed sequence
Background: Modern proteomes evolved by modification of pre-existing ones. It is extremely important to comparative biology that related proteins be identified as members of the s...
Adriano Barbosa-Silva, Venkata P. Satagopam, Reinh...
CEJCS
2011
78views more  CEJCS 2011»
12 years 10 months ago
Good versus optimal: Why network analytic methods need more systematic evaluation
: Network analytic method designed for the analysis of static networks promise to identify significant relational patterns that correlate with important structures in the complex ...
Katharina Anna Zweig
ALMOB
2007
170views more  ALMOB 2007»
13 years 10 months ago
A spatio-temporal mining approach towards summarizing and analyzing protein folding trajectories
Understanding the protein folding mechanism remains a grand challenge in structural biology. In the past several years, computational theories in molecular dynamics have been empl...
Hui Yang, Srinivasan Parthasarathy, Duygu Ucar
BMCBI
2006
108views more  BMCBI 2006»
13 years 10 months ago
Promoter prediction and annotation of microbial genomes based on DNA sequence and structural responses to superhelical stress
Background: In our previous studies, we found that the sites in prokaryotic genomes which are most susceptible to duplex destabilization under the negative superhelical stresses t...
Huiquan Wang, Craig J. Benham
BIBM
2010
IEEE
277views Bioinformatics» more  BIBM 2010»
13 years 8 months ago
Accurate prediction of ATP-binding residues using sequence and sequence-derived structural descriptors
ATP is a ubiquitous nucleotide that provides energy for cellular activities, catalyzes chemical reactions, and is involved in cellular signaling. The knowledge of the ATPprotein in...
Ke Chen 0003, Marcin J. Mizianty, Lukasz A. Kurgan