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» Identifying Structural Motifs in Proteins
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NAR
2011
241views Computer Vision» more  NAR 2011»
13 years 4 months ago
PRIDB: a protein-RNA interface database
The Protein–RNA Interface Database (PRIDB) is a comprehensive database of protein–RNA interfaces extracted from complexes in the Protein Data Bank (PDB). It is designed to fac...
Benjamin A. Lewis, Rasna R. Walia, Michael Terribi...
GCB
2000
Springer
99views Biometrics» more  GCB 2000»
14 years 1 months ago
Structure Motif Discovery and Mining the PDB
We describe an algorithm for the automatic discovery of recurring patterns in protein structures. The patterns consist of individual residues having a defined order along the prote...
Inge Jonassen, Ingvar Eidhammer, Darrell Conklin, ...
BIBM
2008
IEEE
113views Bioinformatics» more  BIBM 2008»
14 years 4 months ago
Towards Site-Based Protein Functional Annotations
Abstract—The exact relationship between protein active centers and protein functions is unclear even after decades of intensive study. To improve the functional prediction abilit...
Seak Fei Lei, Jun Huan
BIOCOMP
2010
13 years 7 months ago
Extraction of Protein Sequence Motifs Information by Bi-Clustering Algorithm
- The activities and function of proteins can potentially be determined by protein sequence motifs. Therefore, obtaining the universally conserved and crossed protein family bounda...
Vincent Yip, Bernard Chen, Sinan Kockara
ISMB
1994
13 years 11 months ago
Segmentation and Interpretation of 3D Protein Images
The segmentation and interpretation of threedimensionalimagesof proteins is considered. Atopological approachis used to represent a protein structure as a spanningtree of critical...
Laurence Leherte, Kim Baxter, Janice I. Glasgow, S...