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ERSA
2007
142views Hardware» more  ERSA 2007»
13 years 11 months ago
An FPGA Implementation of Reciprocal Sums for SPME
Molecular Dynamics simulations have become an interesting target for acceleration using Field-Programmable Gate Arrays (FPGA). Still to be attempted completely in FPGA hardware is...
Sam Lee, Paul Chow
IPPS
2008
IEEE
14 years 4 months ago
Model-guided performance tuning of parameter values: A case study with molecular dynamics visualization
In this paper, we consider the interaction between application programmers and tools that automatically search a space of application-level parameters that are believed to impact ...
Yiinju L. Nelson, Bhupesh Bansal, Mary W. Hall, Ai...
IPPS
2008
IEEE
14 years 4 months ago
Overcoming scaling challenges in biomolecular simulations across multiple platforms
NAMD† is a portable parallel application for biomolecular simulations. NAMD pioneered the use of hybrid spatial and force decomposition, a technique now used by most scalable pr...
Abhinav Bhatele, Sameer Kumar, Chao Mei, James C. ...
ICPPW
2006
IEEE
14 years 4 months ago
Performance Analysis of a Parallel Discrete Model for the Simulation of Laser Dynamics
This paper presents an analysis on the performance of a parallel implementation of a discrete model of laser dynamics, which is based on cellular automata. The performance of a 2D...
Jose Luis Guisado, Francisco Fernández de V...
HIPC
2003
Springer
14 years 3 months ago
Performance Analysis of Blue Gene/L Using Parallel Discrete Event Simulation
High performance computers currently under construction, such as IBM’s Blue Gene/L, consisting of large numbers (64K) of low cost processing elements with relatively small local...
Ed Upchurch, Paul L. Springer, Maciej Brodowicz, S...