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» Implementing Matching in ALE--First Results
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HIPEAC
2007
Springer
14 years 1 months ago
Performance/Energy Optimization of DSP Transforms on the XScale Processor
The XScale processor family provides user-controllable independent configuration of CPU, bus, and memory frequencies. This feature introduces another handle for the code optimizat...
Paolo D'Alberto, Markus Püschel, Franz Franch...
CAV
2010
Springer
194views Hardware» more  CAV 2010»
13 years 11 months ago
LTSmin: Distributed and Symbolic Reachability
ions of ODE models (MAPLE, GNA). On the algorithmic side (Sec. 3.2), it supports two main streams in high-performance model checking: reachability analysis based on BDDs (symbolic)...
Stefan Blom, Jaco van de Pol, Michael Weber
BMCBI
2010
122views more  BMCBI 2010»
13 years 7 months ago
Fast and accurate protein substructure searching with simulated annealing and GPUs
Background: Searching a database of protein structures for matches to a query structure, or occurrences of a structural motif, is an important task in structural biology and bioin...
Alex Stivala, Peter J. Stuckey, Anthony Wirth
BMCBI
2005
158views more  BMCBI 2005»
13 years 7 months ago
Automated generation of heuristics for biological sequence comparison
Background: Exhaustive methods of sequence alignment are accurate but slow, whereas heuristic approaches run quickly, but their complexity makes them more difficult to implement. ...
Guy St. C. Slater, Ewan Birney
BMCBI
2004
150views more  BMCBI 2004»
13 years 7 months ago
SS-Wrapper: a package of wrapper applications for similarity searches on Linux clusters
Background: Large-scale sequence comparison is a powerful tool for biological inference in modern molecular biology. Comparing new sequences to those in annotated databases is a u...
Chunlin Wang, Elliot J. Lefkowitz