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ECCB
2005
IEEE
14 years 1 months ago
A query language for biological networks
Many areas of modern biology are concerned with the management, storage, visualization, comparison, and analysis of networks. For instance, networks are used to model signal trans...
Ulf Leser
BMCBI
2006
182views more  BMCBI 2006»
13 years 7 months ago
A database and tool, IM Browser, for exploring and integrating emerging gene and protein interaction data for Drosophila
Background: Biological processes are mediated by networks of interacting genes and proteins. Efforts to map and understand these networks are resulting in the proliferation of int...
Svetlana Pacifico, Guozhen Liu, Stephen Guest, Jod...
BMCBI
2006
184views more  BMCBI 2006»
13 years 7 months ago
PathSys: integrating molecular interaction graphs for systems biology
Background: The goal of information integration in systems biology is to combine information from a number of databases and data sets, which are obtained from both high and low th...
Michael Baitaluk, Xufei Qian, Shubhada Godbole, Al...
IPPS
2009
IEEE
14 years 2 months ago
Compact graph representations and parallel connectivity algorithms for massive dynamic network analysis
Graph-theoretic abstractions are extensively used to analyze massive data sets. Temporal data streams from socioeconomic interactions, social networking web sites, communication t...
Kamesh Madduri, David A. Bader
SIGMOD
2009
ACM
139views Database» more  SIGMOD 2009»
14 years 7 months ago
Vispedia: on-demand data integration for interactive visualization and exploration
Wikipedia is an example of the large, collaborative, semi-structured data sets emerging on the Web. Typically, before these data sets can be used, they must transformed into struc...
Bryan Chan, Justin Talbot, Leslie Wu, Nathan Sakun...