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» Improved Duplication Models for Proteome Network Evolution
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RECOMB
2005
Springer
14 years 11 months ago
Improved Duplication Models for Proteome Network Evolution
Protein-protein interaction networks, particularly that of the yeast S. Cerevisiae, have recently been studied extensively. These networks seem to satisfy the small world property ...
Gürkan Bebek, Petra Berenbrink, Colin Cooper,...
WABI
2009
Springer
128views Bioinformatics» more  WABI 2009»
14 years 5 months ago
Improving Inference of Transcriptional Regulatory Networks Based on Network Evolutionary Models
Abstract. Computational inference of transcriptional regulatory networks remains a challenging problem, in part due to the lack of strong network models. In this paper we present e...
Xiuwei Zhang, Bernard M. E. Moret
GECCO
2005
Springer
14 years 4 months ago
Using gene deletion and gene duplication in evolution strategies
Self-adaptation of the mutation strengths is a powerful mechanism in evolution strategies (ES), but it can fail. As a consequence premature convergence or ending up in a local opt...
Karlheinz Schmitt
WABI
2004
Springer
116views Bioinformatics» more  WABI 2004»
14 years 4 months ago
Topological Rearrangements and Local Search Method for Tandem Duplication Trees
—The problem of reconstructing the duplication history of a set of tandemly repeated sequences was first introduced by Fitch [4]. Many recent studies deal with this problem, show...
Denis Bertrand, Olivier Gascuel
JSSPP
2009
Springer
14 years 5 months ago
Contention-Aware Scheduling with Task Duplication
Scheduling a task graph onto several processors is a trade-off between maximising concurrency and minimising interprocessor communication. A technique to reduce or avoid interproc...
Oliver Sinnen, Andrea To, Manpreet Kaur