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RECOMB
2008
Springer
14 years 9 months ago
Integrating Sequence and Topology for Efficient and Accurate Detection of Horizontal Gene Transfer
Abstract. One phylogeny-based approach to horizontal gene transfer (HGT) detection entails comparing the topology of a gene tree to that of the species tree, and using their differ...
Cuong Than, Guohua Jin, Luay Nakhleh
BMCBI
2005
102views more  BMCBI 2005»
13 years 9 months ago
BioCreAtIvE Task1A: entity identification with a stochastic tagger
Background: Our approach to Task 1A was inspired by Tanabe and Wilbur's ABGene system [1,2]. Like Tanabe and Wilbur, we approached the problem as one of part-of-speech taggin...
Shuhei Kinoshita, K. Bretonnel Cohen, Philip V. Og...
BMCBI
2010
146views more  BMCBI 2010»
13 years 9 months ago
On the Choice and Number of Microarrays for Transcriptional Regulatory Network Inference
Background: Transcriptional regulatory network inference (TRNI) from large compendia of DNA microarrays has become a fundamental approach for discovering transcription factor (TF)...
Elissa J. Cosgrove, Timothy S. Gardner, Eric D. Ko...
ECAI
2004
Springer
14 years 2 months ago
Guiding a Theorem Prover with Soft Constraints
Attempts to use finite models to guide the search for proofs by resolution and the like in first order logic all suffer from the need to trade off the expense of generating and m...
John K. Slaney, Arnold Binas, David Price
BMCBI
2011
13 years 4 months ago
A novel approach to the clustering of microarray data via nonparametric density estimation
Background: Cluster analysis is a crucial tool in several biological and medical studies dealing with microarray data. Such studies pose challenging statistical problems due to di...
Riccardo De Bin, Davide Risso