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IPPS
2007
IEEE
14 years 1 months ago
Analysis of a Computational Biology Simulation Technique on Emerging Processing Architectures
1 Multi-paradigm, multi-threaded and multi-core computing devices available today provide several orders of magnitude performance improvement over mainstream microprocessors. These...
Jeremy S. Meredith, Sadaf R. Alam, Jeffrey S. Vett...
IPPS
2002
IEEE
14 years 14 days ago
Improving Performance of Multiple Sequence Alignment Analysis in Multi-Client Environments
This paper is concerned with the efficient execution of multiplesequence alignmentmethodsin a multipleclientenvironment. Multiple sequence alignment (MSA) is a computationally ex...
Ümit V. Çatalyürek, Eric Stahlber...
ICSE
2010
IEEE-ACM
14 years 10 days ago
Using dynamic execution traces and program invariants to enhance behavioral model inference
Software behavioral models have proven useful for design, validation, verification, and maintenance. However, existing approaches for deriving such models sometimes overgeneraliz...
Ivo Krka, Yuriy Brun, Daniel Popescu, Joshua Garci...
STOC
2003
ACM
164views Algorithms» more  STOC 2003»
14 years 7 months ago
Approximate counting by dynamic programming
We give efficient algorithms to sample uniformly, and count approximately, the solutions to a zero-one knapsack problem. The algorithm is based on using dynamic programming to pro...
Martin E. Dyer
ICMLA
2007
13 years 9 months ago
Maximum Likelihood Quantization of Genomic Features Using Dynamic Programming
Dynamic programming is introduced to quantize a continuous random variable into a discrete random variable. Quantization is often useful before statistical analysis or reconstruct...
Mingzhou (Joe) Song, Robert M. Haralick, Sté...