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» Improving EAs for Sequencing Problems
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143
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BMCBI
2006
143views more  BMCBI 2006»
15 years 3 months ago
Fast estimation of the difference between two PAM/JTT evolutionary distances in triplets of homologous sequences
Background: The estimation of the difference between two evolutionary distances within a triplet of homologs is a common operation that is used for example to determine which of t...
Christophe Dessimoz, Manuel Gil, Adrian Schneider,...
139
Voted
BMCBI
2006
152views more  BMCBI 2006»
15 years 3 months ago
Predicting deleterious nsSNPs: an analysis of sequence and structural attributes
Background: There has been an explosion in the number of single nucleotide polymorphisms (SNPs) within public databases. In this study we focused on non-synonymous protein coding ...
Richard J. B. Dobson, Patricia B. Munroe, Mark J. ...
148
Voted
RECOMB
2008
Springer
16 years 3 months ago
Integrating Sequence and Topology for Efficient and Accurate Detection of Horizontal Gene Transfer
Abstract. One phylogeny-based approach to horizontal gene transfer (HGT) detection entails comparing the topology of a gene tree to that of the species tree, and using their differ...
Cuong Than, Guohua Jin, Luay Nakhleh
CIBCB
2007
IEEE
15 years 7 months ago
Prediction of Enzyme Catalytic Sites from Sequence Using Neural Networks
The accurate prediction of enzyme catalytic sites remains an open problem in bioinformatics. Recently, several structure-based methods have become popular; however, few robust seq...
Swati Pande, Amar Raheja, Dennis R. Livesay
131
Voted
ICASSP
2011
IEEE
14 years 7 months ago
Sparse video recovery using Linearly Constrained Gradient Projection
This paper concerns the reconstruction of a temporally-varying scene from a video sequence of noisy linear projections. Assuming that each video frame is sparse or compressible in...
Daniel Thompson, Zachary T. Harmany, Roummel F. Ma...