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» Improving EAs for Sequencing Problems
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CCECE
2006
IEEE
14 years 3 months ago
Dynamic and Parallel Approaches to Optimal Evolutionary Tree Construction
Phylogenetic trees are commonly reconstructed based on hard optimization problems such as Maximum parsimony (MP) and Maximum likelihood (ML). Conventional MP heuristics for produc...
Anupam Bhattacharjee, Kazi Zakia Sultana, Zalia Sh...
CIBCB
2006
IEEE
14 years 3 months ago
Machine Learning in Basecalling Decoding Trace Peak Behaviour
— DNA sequence basecalling is commonly regarded as a solved problem, despite significant error rates being reflected in inaccuracies in databases and genome annotations. These er...
David Thornley, Stavros Petridis
CPAIOR
2010
Springer
14 years 2 months ago
The Increasing Nvalue Constraint
This paper introduces the Increasing Nvalue constraint, which restricts the number of distinct values assigned to a sequence of variables so that each variable in the sequence is l...
Nicolas Beldiceanu, Fabien Hermenier, Xavier Lorca...
CORR
2007
Springer
81views Education» more  CORR 2007»
13 years 9 months ago
Faster exon assembly by sparse spliced alignment
Assembling a gene from candidate exons is an important problem in computational biology. Among the most successful approaches to this problem is spliced alignment, proposed by Gelf...
Alexandre Tiskin
CEC
2009
IEEE
14 years 1 months ago
A novel EDAs based method for HP model protein folding
— The protein structure prediction (PSP) problem is one of the most important problems in computational biology. This paper proposes a novel Estimation of Distribution Algorithms...
Benhui Chen, Long Li, Jinglu Hu