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AINA
2008
IEEE
13 years 7 months ago
Communication Protocols and Message Formats for BLAST Parallelization on Cluster Systems
With the widespread use of BLAST, many parallel versions of BLAST on cluster systems are announced, but little work has been done for the parallel execution in the search for indi...
Hong-Soog Kim, Woo-Hyuk Jang, Dong-Soo Han
CLUSTER
2003
IEEE
14 years 12 days ago
A Cluster-Based Solution for High Performance Hmmpfam Using EARTH Execution Model
Hmmpfam is a widely used computation-intensive bioinformatics software for sequence classification. The contribution of this paper is the first largely scalable and robust clust...
Weirong Zhu, Yanwei Niu, Jizhu Lu, Chuan Shen, Gua...
ICPP
2007
IEEE
14 years 1 months ago
Improving Static Task Scheduling in Heterogeneous and Homogeneous Computing Systems
In this paper, we present a heuristic algorithm that improves the performance of static task scheduling. Our algorithm is based on the list-scheduling mechanism. For the listing p...
Chih-Hsueh Yang, PeiZong Lee, Yeh-Ching Chung
IPPS
2010
IEEE
13 years 4 months ago
Robust resource allocation of DAGs in a heterogeneous multicore system
In this study, we consider an environment composed of a heterogeneous cluster of multicore-based machines used to analyze satellite images. The workload involves large data sets, a...
Luis D. Briceo, Jay Smith, Howard Jay Siegel, Anth...
EUROPAR
2009
Springer
13 years 11 months ago
Distributed Data Partitioning for Heterogeneous Processors Based on Partial Estimation of Their Functional Performance Models
The paper presents a new data partitioning algorithm for parallel computing on heterogeneous processors. Like traditional functional partitioning algorithms, the algorithm assumes ...
Alexey L. Lastovetsky, Ravi Reddy