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» Improving gene set analysis of microarray data by SAM-GS
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JCB
2007
198views more  JCB 2007»
13 years 7 months ago
Bayesian Hierarchical Model for Large-Scale Covariance Matrix Estimation
Many bioinformatics problems can implicitly depend on estimating large-scale covariance matrix. The traditional approaches tend to give rise to high variance and low accuracy esti...
Dongxiao Zhu, Alfred O. Hero III
TREC
2007
13 years 8 months ago
Language Models for Genomics Information Retrieval: UIUC at TREC 2007 Genomics Track
The University of Illinois at Urbana-Champaign (UIUC) participated in TREC 2007 Genomics Track. Our general goal of participation is to apply language modelbased approaches to the...
Yue Lu, Jing Jiang, Xu Ling, Xin He, ChengXiang Zh...
BMCBI
2006
99views more  BMCBI 2006»
13 years 7 months ago
Genetic algorithm learning as a robust approach to RNA editing site prediction
Background: RNA editing is one of several post-transcriptional modifications that may contribute to organismal complexity in the face of limited gene complement in a genome. One f...
James Thompson, Shuba Gopal
ICML
2008
IEEE
14 years 8 months ago
Expectation-maximization for sparse and non-negative PCA
We study the problem of finding the dominant eigenvector of the sample covariance matrix, under additional constraints on the vector: a cardinality constraint limits the number of...
Christian D. Sigg, Joachim M. Buhmann
MLG
2007
Springer
14 years 1 months ago
Abductive Stochastic Logic Programs for Metabolic Network Inhibition Learning
Abstract. We revisit an application developed originally using Inductive Logic Programming (ILP) by replacing the underlying Logic Program (LP) description with Stochastic Logic Pr...
Jianzhong Chen, Stephen Muggleton, Jose Santos