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BMCBI
2005
132views more  BMCBI 2005»
13 years 7 months ago
Kalign - an accurate and fast multiple sequence alignment algorithm
Background: The alignment of multiple protein sequences is a fundamental step in the analysis of biological data. It has traditionally been applied to analyzing protein families f...
Timo Lassmann, Erik L. L. Sonnhammer
CIBCB
2006
IEEE
14 years 1 months ago
Optimization of the Sliding Window Size for Protein Structure Prediction
- Sliding window based methods are relatively often applied in prediction of various aspects related to protein structure. Despite their wide spread use, researchers did not establ...
Ke Chen, Lukasz A. Kurgan, Jishou Ruan
BMCBI
2004
138views more  BMCBI 2004»
13 years 7 months ago
Constraint Logic Programming approach to protein structure prediction
Background: The protein structure prediction problem is one of the most challenging problems in biological sciences. Many approaches have been proposed using database information ...
Alessandro Dal Palù, Agostino Dovier, Feder...
BMCBI
2005
87views more  BMCBI 2005»
13 years 7 months ago
ProfNet, a method to derive profile-profile alignment scoring functions that improves the alignments of distantly related protei
Background: Profile-profile methods have been used for some years now to detect and align homologous proteins. The best such methods use information from the background distributi...
Tomas Ohlson, Arne Elofsson
ADC
2007
Springer
125views Database» more  ADC 2007»
14 years 1 months ago
Building a Disordered Protein Database: A Case Study in Managing Biological Data
A huge diversity of biological databases is available via the Internet, but many of these databases have been developed in an ad hoc manner rather than in accordance with any data...
Arran D. Stewart, Xiuzhen Zhang