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13 years 10 months ago
Search for a New Description of Protein Topology and Local Structure
A novel description of protein structure in terms of the generalized secondary structure elements (GSSE) is proposed. GSSE's are defined as fragments of the protein structure...
Lukasz Jaroszewski, Adam Godzik
BMCBI
2006
160views more  BMCBI 2006»
13 years 8 months ago
Gene prediction in eukaryotes with a generalized hidden Markov model that uses hints from external sources
Background: In order to improve gene prediction, extrinsic evidence on the gene structure can be collected from various sources of information such as genome-genome comparisons an...
Mario Stanke, Oliver Schöffmann, Burkhard Mor...
BMCBI
2004
73views more  BMCBI 2004»
13 years 8 months ago
Use of a structural alphabet for analysis of short loops connecting repetitive structures
Background: Because loops connect regular secondary structures, analysis of the former depends directly on the definition of the latter. The numerous assignment methods, however, ...
Laurent Fourrier, Cristina Benros, Alexandre G. de...
APBC
2003
134views Bioinformatics» more  APBC 2003»
13 years 10 months ago
A Framework for Improving Protein Structure Predictions by Teamwork
Predicting the three dimensional structure of proteins is a difficult task. In the last years several approaches have been proposed for performing this task taking into account d...
Luigi Palopoli, Giorgio Terracina
MSR
2009
ACM
14 years 3 months ago
Does calling structure information improve the accuracy of fault prediction?
Previous studies have shown that software code attributes, such as lines of source code, and history information, such as the number of code changes and the number of faults in pr...
Yonghee Shin, Robert M. Bell, Thomas J. Ostrand, E...