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» In Praise of Numerical Computation
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ALMOB
2006
138views more  ALMOB 2006»
13 years 9 months ago
A combinatorial optimization approach for diverse motif finding applications
Background: Discovering approximately repeated patterns, or motifs, in biological sequences is an important and widely-studied problem in computational molecular biology. Most fre...
Elena Zaslavsky, Mona Singh
BMCBI
2006
95views more  BMCBI 2006»
13 years 9 months ago
A quantitative analysis of secondary RNA structure using domination based parameters on trees
Background: It has become increasingly apparent that a comprehensive database of RNA motifs is essential in order to achieve new goals in genomic and proteomic research. Secondary...
Teresa W. Haynes, Debra J. Knisley, Edith Seier, Y...
BMCBI
2006
102views more  BMCBI 2006»
13 years 9 months ago
SNA - a toolbox for the stoichiometric analysis of metabolic networks
Background: Despite recent algorithmic and conceptual progress, the stoichiometric network analysis of large metabolic models remains a computationally challenging problem. Result...
Robert Urbanczik
BMCBI
2006
141views more  BMCBI 2006»
13 years 9 months ago
Asymptotic behaviour and optimal word size for exact and approximate word matches between random sequences
Background: The number of k-words shared between two sequences is a simple and effcient alignment-free sequence comparison method. This statistic, D2, has been used for the cluste...
Sylvain Forêt, Miriam R. Kantorovitz, Conrad...
COR
2007
80views more  COR 2007»
13 years 9 months ago
Scheduling with tool changes to minimize total completion time under controllable machining conditions
Scheduling under controllable machining conditions has been studied for some time. Scheduling with tool changes, particularly due to tool wear, has just begun to receive attention...
M. Selim Akturk, Jay B. Ghosh, Rabia K. Kayan