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» In Search of Optimal Codes for DNA Computing
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DNA
2006
Springer
100views Bioinformatics» more  DNA 2006»
13 years 9 months ago
In Search of Optimal Codes for DNA Computing
Max H. Garzon, Vinhthuy T. Phan, Sujoy Roy, Andrew...
CIBCB
2007
IEEE
13 years 11 months ago
Hybrid Architecture for Accelerating DNA Codeword Library Searching
-- A large and reliable DNA codeword library is the key to the success of DNA based computing. Searching for the set of reliable DNA codewords is an NP-hard problem, which can take...
Qinru Qiu, Daniel J. Burns, Qing Wu, Prakash Mukre
GECCO
2007
Springer
209views Optimization» more  GECCO 2007»
13 years 11 months ago
Hardware acceleration of multi-deme genetic algorithm for the application of DNA codeword searching
A large and reliable DNA codeword library is key to the success of DNA based computing. Searching for sets of reliable DNA codewords is an NP-hard problem, which can take days on ...
Qinru Qiu, Daniel J. Burns, Prakash Mukre, Qing Wu
IPPS
2006
IEEE
14 years 1 months ago
FPGA based architecture for DNA sequence comparison and database search
DNA sequence comparison is a computationally intensive problem, known widely since the competition for human DNA decryption. Database search for DNA sequence comparison is of grea...
Euripides Sotiriades, Christos Kozanitis, Apostolo...
ICALP
2005
Springer
14 years 28 days ago
Randomized Fast Design of Short DNA Words
We consider the problem of efficiently designing sets (codes) of equal-length DNA strings (words) that satisfy certain combinatorial constraints. This problem has numerous motivati...
Ming-Yang Kao, Manan Sanghi, Robert T. Schweller