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STRINGOLOGY
2004
13 years 8 months ago
Sorting suffixes of two-pattern strings
Recently, several authors presented linear recursive algorithms for sorting suffixes of a string. All these algorithms employ a similar three-step approach, based on an initial di...
Frantisek Franek, William F. Smyth
ALGORITHMICA
1999
112views more  ALGORITHMICA 1999»
13 years 7 months ago
Suffix Trees on Words
We discuss an intrinsic generalization of the suffix tree, designed to index a string of length n which has a natural partitioning into m multicharacter substrings or words. This ...
Arne Andersson, N. Jesper Larsson, Kurt Swanson
DCC
2009
IEEE
14 years 8 months ago
Linear Suffix Array Construction by Almost Pure Induced-Sorting
We present a linear time and space suffix array (SA) construction algorithm called the SA-IS algorithm. The SA-IS algorithm is novel because of the LMS-substrings used for the pro...
Ge Nong, Sen Zhang, Wai Hong Chan
CPM
2009
Springer
131views Combinatorics» more  CPM 2009»
13 years 10 months ago
Linear Time Suffix Array Construction Using D-Critical Substrings
In this paper we present in detail a new efficient linear time and space suffix array construction algorithm(SACA), called the D-CriticalSubstring algorithm. The algorithm is built...
Ge Nong, Sen Zhang, Wai Hong Chan
CIKM
2008
Springer
13 years 9 months ago
A new method for indexing genomes using on-disk suffix trees
We propose a new method to build persistent suffix trees for indexing the genomic data. Our algorithm DiGeST (Disk-Based Genomic Suffix Tree) improves significantly over previous ...
Marina Barsky, Ulrike Stege, Alex Thomo, Chris Upt...