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NIPS
2003
13 years 9 months ago
Gene Expression Clustering with Functional Mixture Models
We propose a functional mixture model for simultaneous clustering and alignment of sets of curves measured on a discrete time grid. The model is specifically tailored to gene exp...
Darya Chudova, Christopher E. Hart, Eric Mjolsness...
ICDM
2005
IEEE
215views Data Mining» more  ICDM 2005»
14 years 1 months ago
CLUGO: A Clustering Algorithm for Automated Functional Annotations Based on Gene Ontology
We address the issue of providing highly informative and comprehensive annotations using information revealed by the structured vocabularies of Gene Ontology (GO). For a target, a...
In-Yee Lee, Jan-Ming Ho, Ming-Syan Chen
BMCBI
2008
138views more  BMCBI 2008»
13 years 8 months ago
Methods for simultaneously identifying coherent local clusters with smooth global patterns in gene expression profiles
Background: The hierarchical clustering tree (HCT) with a dendrogram [1] and the singular value decomposition (SVD) with a dimension-reduced representative map [2] are popular met...
Yin-Jing Tien, Yun-Shien Lee, Han-Ming Wu, Chun-Ho...
IJCNN
2006
IEEE
14 years 2 months ago
Kernel Based Functional Gene Grouping
Abstract— During the last years, high throughput experiments have become very popular. During the analysis of such data the need for a functional grouping of genes arises. In thi...
Holger Fröhlich, Nora Speer, Christian Spieth...
BMCBI
2008
88views more  BMCBI 2008»
13 years 8 months ago
Microarray-based gene set analysis: a comparison of current methods
Background: The analysis of gene sets has become a popular topic in recent times, with researchers attempting to improve the interpretability and reproducibility of their microarr...
Sarah Song, Michael A. Black